Cophenetic metrics for phylogenetic trees, after Sokal and Rohlf
Correlation between metrics over phylogenetic trees with 3 leaves
Non-necessary binary phylogenetic trees
Spearman's correlation between cophenetic, nodal and RF metrics.
| Cophenetic p=1 | Cophenetic p=2 | Nodalsp p=1 | Nodalsp p=2 | RF |
Coph p=1 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
Coph p=2 | | 1.0 | 1.0 | 1.0 | 1.0 |
Nsp p=1 | | | 1.0 | 1.0 | 1.0 |
Nsp p=2 | | | | 1.0 | 1.0 |
RF | | | | | 1.0 |
2D histograms. A darker squeare means that there are more trees with that relationship.
| Cophenetic p=2 | Nodalsp p=1 | Nodalsp p=2 | RF |
Coph p=1 |  |  |  |  |
Coph p=2 | |  |  |  |
Nsp p=1 | | |  |  |
Nsp p=2 | | | |  |
Binary phylogenetic trees
Spearman's correlation between cophenetic, nodal and RF metrics.
| Cophenetic p=1 | Cophenetic p=2 | Nodalsp p=1 | Nodalsp p=2 | Nodalunsp p=1 | Nodalunsp p=2 | RF |
Coph p=1 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
Coph p=2 | | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
Nsp p=1 | | | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
Nsp p=2 | | | | 1.0 | 1.0 | 1.0 | 1.0 |
Nunsp p=1 | | | | | 1.0 | 1.0 | 1.0 |
Nunsp p=2 | | | | | | 1.0 | 1.0 |
RF | | | | | | | 1.0 |
2D histograms. A darker squeare means that there are more trees with that relationship.
| Cophenetic p=2 | Nodalsp p=1 | Nodalsp p=2 | Nodalunsp p=1 | Nodalunsp p=2 | RF |
Coph p=1 |  |  |  |  |  |  |
Coph p=2 | |  |  |  |  |  |
Nsp p=1 | | |  |  |  |  |
Nsp p=2 | | | |  |  |  |
Nunsp p=1 | | | | |  |  |
Nunsp p=2 | | | | | |  |