Cophenetic metrics for phylogenetic trees, after Sokal and Rohlf
Correlation between metrics over phylogenetic trees with 6 leaves
Non-necessary binary phylogenetic trees
Spearman's correlation between cophenetic, nodal and RF metrics.
| | Cophenetic p=1 | Cophenetic p=2 | Nodalsp p=1 | Nodalsp p=2 | RF |
| Coph p=1 | 1.0 | 0.96511547 | 0.80315891 | 0.86411258 | 0.50563126 |
| Coph p=2 | | 1.0 | 0.83138725 | 0.90257313 | 0.52983667 |
| Nsp p=1 | | | 1.0 | 0.95705691 | 0.66575159 |
| Nsp p=2 | | | | 1.0 | 0.64220278 |
| RF | | | | | 1.0 |
2D histograms. A darker squeare means that there are more trees with that relationship.
| | Cophenetic p=2 | Nodalsp p=1 | Nodalsp p=2 | RF |
| Coph p=1 |  |  |  |  |
| Coph p=2 | |  |  |  |
| Nsp p=1 | | |  |  |
| Nsp p=2 | | | |  |
Binary phylogenetic trees
Spearman's correlation between cophenetic, nodal and RF metrics.
| | Cophenetic p=1 | Cophenetic p=2 | Nodalsp p=1 | Nodalsp p=2 | Nodalunsp p=1 | Nodalunsp p=2 | RF |
| Coph p=1 | 1.0 | 0.96630892 | 0.90115392 | 0.93053266 | 0.06621688 | 0.05775149 | 0.47377498 |
| Coph p=2 | | 1.0 | 0.93720908 | 0.97164941 | 0.09370836 | 0.10091363 | 0.50113041 |
| Nsp p=1 | | | 1.0 | 0.9633804 | 0.19364616 | 0.17766881 | 0.57215378 |
| Nsp p=2 | | | | 1.0 | 0.16268728 | 0.16554993 | 0.55079112 |
| Nunsp p=1 | | | | | 1.0 | 0.92842086 | 0.58512653 |
| Nunsp p=2 | | | | | | 1.0 | 0.62364362 |
| RF | | | | | | | 1.0 |
2D histograms. A darker squeare means that there are more trees with that relationship.
| | Cophenetic p=2 | Nodalsp p=1 | Nodalsp p=2 | Nodalunsp p=1 | Nodalunsp p=2 | RF |
| Coph p=1 |  |  |  |  |  |  |
| Coph p=2 | |  |  |  |  |  |
| Nsp p=1 | | |  |  |  |  |
| Nsp p=2 | | | |  |  |  |
| Nunsp p=1 | | | | |  |  |
| Nunsp p=2 | | | | | |  |