Some recent publications

 

Preprints

Research papers

Proceedings

 

                                       

Preprints

 

J. Rocha, F. Rossell—, J. Segura. The Universal Similarity Metric does not detect domain similarity. Technical Report

 

F. Rossell—, G. Valiente. An algebraic distance for phylogenetic trees. Technical Report

 

R. Alberich, J. Miret, J. Mir—, F. Rossell—, S. Xamb—. The Kleiman Graph. Technical Report

 

R. Alberich, J. Mir—, F. Rossell—. Marvel Universe looks almost like a real social network. Technical Report

 

 

Research papers in journals, books, etc.

 

D. Gilbert, F. Rossell—, G. Valiente, M. Veeramalai. Alignment-free comparison of TOPS strings. London Algorithmics and Stringology; Texts in Algorithmics 8 (College Publications, 2006), ch. 11, 177Ð197. Technical Report

 

M. LlabrŽs, J. Rocha, F. Rossell—, G. Valiente. On the Ancestral Compatibility of Two Phylogenetic Trees with  Nested Taxa. Journal of Mathematical Biology 53 (2006), 340-364. Technical Report

 

F. Rossell—, G.  Valiente. An Algebraic View of the Relation between Largest Common Subtrees and Smallest Common Supertrees. Theoretical Computer Science 362 (2006), 33-53. Technical Report

 

J. Casasnovas, F.  Rossell—. Scalar and fuzzy cardinalities of crisp and fuzzy multisets. International Journal of Intelligent Systems, en premsa. Technical Report

 

W. Bartol, F. Rossell—. The weak hereditary class of a variety. Czechoslovak Mathematical Journal 56 (2006), 697-710.   Technical Report

 

F. Rossell—, G. Valiente. Chemical Graphs, Chemical Reaction Graphs, and Chemical Graph Transformation.  Electronic Notes in Theoretical Computer Science 127 (2005), 157-166. Technical Report

 

F. Rossell—.  Comparing biomolecular contact structures: the algebraic way.  Recent results in natural computing (Ed. FŽnix, 2005), 247-276. Technical Report

 

F. Rossell—, G.  Valiente. Graph grammars and molecular biology. Lecture Notes in Computer Science  3393 (2005), 116-133. Technical Report

 

J. Casasnovas, F.  Rossell—. Averaging fuzzy genomes.  Fuzzy Sets and Systems 152  (2005), 139-158. Technical Report

 

W. Bartol, J.  Casasnovas, F.  Rossell—. Monouary algebras are uniquely determined by their lattices of fuzzy weak subalgebras.  Fuzzy Sets and Systems, 149 (2005), 349-367.  Technical Report

 

M. LlabrŽs, F.  Rossell—. The uniqueness condition for the double pushout transformation of algebras. Information Sciences 171 (2005), 93-124. Technical Report

 

J. Mir—, F.  Rossell—. Czy w Unii Europekskiej m—wiono po polsku? Delta 361 (2004), 4-6. Electronic publication

 

F. Rossell—, G.  Valiente. Analysis of metabolic pathways by graph transformation.  Lecture Notes in Computer Science 3256 (2004), 70-82. Technical Report

 

J. Casasnovas, J.   Mir—, M.  Moyˆ, F.  Rossell—. An approach to membrane computing under uncertainty.  International Journal of Foundations of Computer Science, 15 (2004). 841-864. Technical Report

 

F. Rossell—. ReidysÕ and Stadler's metrics for RNA Secondary Structures. Mathematical and Computer Modelling, 40 (2004), 771-776.  Technical Report

 

W. Bartol, J.  Miro, K.  Pioro, F. Rossell—. On the coverings by tolerance classes.  Information Sciences,  166 (2004), 193-211. Technical Report

 

M. LlabrŽs, F.  Rossell—. A new family of metrics for biopolymer contact structures.  Computational Biology and  Chemistry 28 (2004), 21-37. Technical Report

 

R. Alberich, M.  LlabrŽs, F.  Rossell—. Single-pushout transformation of total algebras. International Journal of Foundations of Computer Science 15 (2004),  205-222. Technical Report

 

J. Casasnovas, J.  Mir—, F.  Rossell—. On the algebraic representation of RNA secondary structures with G.U pairs. Journal of Mathematical Biology  47 (2003), 1-22. Technical Report

 

Proceedings

 

J. Casasnovas, J. Clemente, J. Mir—-Juliˆ, F. Rossell—, K. Satou, G. Valiente. Fuzzy clustering improves the reconstruction of phylogenetic relationships from metabolic pathways. Proceedings IPMU-2006 (2006), 2807-2814. Technical Report

 

T. Asano, F. Rossell—, G. Valiente. Efficient Computation of Template Matrices. Proceedings V JMDA (2006), 79-86. Technical Report

 

F. Rossell—, G. Valiente. Alignment-Free Comparison of Metabolic Pathways.  Proceedings RECOMB 2006 (posters) (2006). Technical Report

 

T. Asano, F. Rossell—, G. Valiente. Template Matrices for Perfect Phylogeny Haplotyping and Site Consistency. Proceedings RECOMB 2006 (posters) (2006). Technical Report

 

J. Casasnovas, F. Rossell—. Fuzzy P systems and their applications in computational biology. Proceedings EUSFLAT-2005, loc. S112-03. Technical Report

 

J. Casasnovas, F. Rossell—. Counting the contents of fuzzy membranes...  and related problems. Proceedings Brainstorming Workshop on Uncertainty in Membrane Computing (2004), 129-142. Technical Report

 

J. Casasnovas, J. Mir—, M. Moyˆ, F. Rossell—. A fuzzy approach to membrane computing with approximate copies. Proceedings Brainstorming Workshop on Uncertainty in Membrane Computing (2004), 121-128. Technical Report

 

J. Casasnovas, F. Rossell—. Midpoints as average representations of pairs of descriptions by means of fuzzy subsets. Proceedings IPMU-2004 (2004), 2157 2164.Technical Report